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sales tax audits: what's triggering them and what sellers need to know

Estimated reading time: 15 minutes

Are you concerned about your ecommerce business being audited for sales tax?

Sales tax audits have significantly increased in the last few years, thanks to more proactive measures from states.

Being sales tax compliant and understanding the audit process is critical.

That’s what this resource is about. Keep reading to learn what an audit is and why you should avoid waiting to register and file until states come knocking on your door.

This blog covers:

Before we start, please note that these are not scare tactics. We see this stuff every day and we have your best interests in mind. 

We are trying to help you by conveying the urgency of getting compliant. If you need support to sort out your sales tax liabilities or would like tailored guidance to set you on the right path, we can help – but either way, the key is that you get this right because the costs of not doing so are significant. 

Key Takeaways

  • Know where you have nexus and get compliant: It is absolutely critical for you to understand exactly where your business has nexus, then register, start collecting, and remit sales tax accordingly. Also, DO NOT start collecting until you’ve registered!
  • Sales tax audits are on the rise: States are aggressively auditing ecommerce businesses, often targeting those that have failed to register, have high initial tax filings, or use resale certificates improperly. A sales tax audit determines if businesses are complying with sales tax laws by correctly collecting and remitting sales tax to the state. States are also working together, sharing data to identify non-compliant sellers.
  • States are identifying businesses that had nexus prior to their registration date: In many instances, some states are going all the way back to when the Wayfair decision was enacted. We’ve even seen them send questionnaires out to unregistered sellers they believe have crossed nexus. States are sharing information and have created groups dedicated to finding non-compliant sellers.
  • Penalties and interest can be devastating: Delaying compliance can lead to penalties and interest that quickly add up. States like Washington impose penalties as high as 39%, making it nearly impossible for small businesses to pay out of pocket. Compliance costs far less than the potential fines.
  • Mitigate audit risks: Registering, filing back taxes, and considering a Voluntary Disclosure Agreement (VDA) can significantly reduce your liability and audit risk. Once an audit starts, your options to reduce penalties or negotiate are gone, so act now to protect your business.

What is a Sales Tax Audit?

A sales tax audit is a process where your business and sales records are examined for a specific time period to make sure you’ve been meeting the state’s sales tax requirements.

The main questions the auditor is looking for answers to are:

  • Registered sellers
    • Did you cross nexus prior to your registration date?
    • How long did you have nexus prior to registering?
  • Unregistered sellers
    • How long ago did you cross nexus? This is typically determined with the business activity questionnaire which preempts the audit. That information will determine the audit period.  
  • Did you collect & remit the correct amount of sales tax according to the taxable sales you made in that state?

Auditors assess whether the correct amount of sales tax owed has been collected and remitted. They examine all sales – marketplace, wholesale, exempt, and taxable sales – and request a breakdown by type and state.

It’s critical to understand nexus, but we are not going to go into depth about it here. We have created a lot of free resources to help you. Check out the following:

10 steps to ensure sales tax doesn't burn down your ecommerce business

The landscape for sales tax compliance has changed dramatically compared to previous years. This is mainly due to the time since the Wayfair Act was passed in 2018.

In the first few years after the Supreme Court’s Wayfair decision, states gave some leniency for online sellers to figure out processes and become compliant.

We are now more than 6 years post-Wayfair, and the states expect compliance.

Leniency is dwindling.

In an effort to detect non-compliance and increase revenue, states are increasingly turning to auditing ecommerce sellers.

Some of the current trends are:

  • Audit task forces
  • Business activity questionnaires and surveys
  • Collaboration among states

Audit Task Forces

Our sales tax services department is noticing that states are actively hiring audit task forces to examine remote sellers. This includes both registered AND unregistered businesses.

The number of auditors is greater in states with high populations like Florida, Washington, and California, potentially increasing the chance of your business being scrutinized.

Pre-Audit Questionnaires and Surveys

It has become more common for states to send out pre-audit questionnaires and business activity surveys to business owners.

In some states, you don’t even have to be registered to receive one of these questionnaires that asks for 3 years of sales data.

We don’t recommend ignoring these notices. You are already on the state’s radar and most likely moving towards an audit.

If you haven’t crossed nexus, these questionnaires can work in your favor!

Providing your sales details can show the state that you’re compliant and there isn’t a need for further investigation.

It’s also an opportunity for you to understand how close you may or may not be to triggering economic nexus in that jurisdiction.

We recently made a video about these pre-audit questionnaires.

Collaboration Between States

Many states in the US are part of the multi-state tax commission that shares business data with their members.

Illinois, for instance, is now asking for sales data from eight or nine other states and then sharing their findings with surrounding states who are also looking for non-compliant businesses.

This level of collaboration between states means that if you’re selling in multiple states and are not compliant in one state, you can be found out through another state’s audit process.

Common Sales Tax Audit Triggers

States are becoming more aggressive in selecting businesses for sales tax audits, and there are several common reasons why your business might be targeted.

Here are some common triggers that could put your business on the radar:

common sales tax audit triggers

  • Failing to register and remit sales tax: One of the most common reasons for an audit is failing to register & remit in a state where your business has established nexus. States are finding ways to identify these businesses and take action against them. (See the Current Trends section.)
  • High initial sales tax reports: If your business reports very high sales tax amounts immediately after registering in a state, that state will suspect that you crossed a nexus threshold much earlier than when you registered. This suspicion will often trigger an audit so the state can review your records and penalize you if you should have registered sooner.
  • Audited vendors or customers: Sometimes, your business might be selected for an audit simply because one of your vendors or customers was audited. States often extend their investigations to the business networks of audited companies to identify potential compliance issues.
  • Significant business changes: Major changes, such as restructuring, mergers, or significant increases in sales, can draw attention. States may audit to ensure these changes haven’t led to non-compliance with sales tax laws.
  • Past audits: If your business has been audited in the past, especially if issues were found, you’re more likely to be audited again. States keep records and often re-audit businesses that have previously had compliance problems.
  • Late reporting and filings: Consistently filing late or submitting inaccurate returns can raise red flags. States view repeated late filings as a sign of potential non-compliance and may initiate an audit to investigate further.

Each state has its own system for deciding what triggers an audit.

By understanding these common triggers, you can better prepare and reduce potential audit risk.

The Risks of Delaying Sales Tax Compliance

Delaying sales tax compliance is often more expensive than the initial cost of compliance.

While you may have saved money for a few years by putting off sales tax filings, depending on the size of your business, the accumulated penalties and interest can be significant depending on how long you’ve had nexus and delayed registration.

Penalties and interest are always accumulating in the background, which is why early compliance is recommended.

Each state determines their own penalties and interest. Some states are notably higher than others, tapping out at 39% of tax owed.

Preparing for a Sales Tax Audit

Audits are becoming more common.

In some states, it’s not a matter of if, but when.

So, the question isn’t really about audit prevention. It’s about audit preparation.

In other words, what can you do to help the audit run smoothly?

Sales tax audit preparation really comes down to ongoing sales tax compliance, and that depends on these things:

  • The basics of sales tax collection and remittance
  • Collecting the right amount of sales tax based on your sales

The Basics of Sales Tax Compliance

The basics of sales tax compliance

Sales tax compliance boils down to:

  • Knowing where you have nexus: This is the first and most important step.
  • Registration: After you know where you have nexus, you need to register there.
  • Collecting sales tax: After you have registered, set up your sales channels to start collecting in those states.
  • Remitting: After you collect the sales tax, you’ve got to remit it according to the states’ deadlines.

One thing that’s super important to point out here is that it is ILLEGAL to collect sales tax without a permit, so don’t do it until you’re registered.

For more details, download our guide 10 Steps to Ensure Sales Tax Doesn’t Burn Down Your Ecommerce Business. It is full of helpful information, tips, and resources to guide you.

Handling Your Sales Correctly

Second, you need to pay attention to your sales types to ensure you’re handling the sales tax for them properly.

They include:

  • Wholesale sales
  • Exempt sales
  • Marketplace sales
  • Taxable sales

Types of sales for sales tax

Wholesale Sales 

If you sell wholesale, make sure your buyers provide valid resale or exemption certificates.

These certificates allow you to skip charging sales tax because your buyer will be reselling the product.

Be sure to keep these on file and ensure they’re valid and up to date, as you’ll be on the line for the missing sales tax if they’re not.

Exempt Sales 

Some sales might be exempt from sales tax.

This include nontaxable products, such as food, clothing or supplements (determined by the individual states), or international sales where the buyer is located outside the U.S.

Just make sure you are categorizing them correctly and have the proper documentation to back it up.

Marketplace Facilitator (MPF) Sales 

If you sell on platforms like Amazon or eBay, make sure to verify that the marketplace facilitator is collecting and remitting sales tax on your behalf.

States now require marketplaces to handle tax collection, but it’s still your responsibility to confirm they’re doing it correctly.

Taxable Sales 

For all other sales, make sure your sales tax engine is calculating the right amount of tax based on the buyer’s location.

This includes tricky areas like home-ruled jurisdictions (local governments that set their own tax rules), like Colorado, and states with unique taxes like Washington’s B&O (Business & Occupation) tax.

If your tax engine isn’t set up correctly, you might be over or undercharging, which will make an audit messy for you.

Preparing for the Audit Itself

Aside from the ongoing practices needed for good compliance, here are some steps to help your business get ready for an audit:

  1. Gather sales data for the audit period: Make sure to include all sources of sales – wholesale, MPF, retail, etc.
  2. Gather all sales tax-related documents and records: This includes sales tax returns, exemption and resale certificates, and any correspondence with the tax authorities. Having everything in one place will make the audit process smoother.
  3. Designate a point of contact for the audit: This person will handle all communications with the auditor to ensure clear and consistent information.
  4. Consider hiring a qualified sales tax firm: Professional help can provide expertise and support throughout the audit process.

By following these steps, you can ensure that your business is well-prepared for a sales tax audit and reduce the risk of penalties.

What to Expect During the Sales Tax Audit Process

Who conducts sales tax audits?

The state department of revenue (DOR) will assign an auditor to your case.

Where will the audit take place?

Audits are being conducted virtually. You will be emailing back and forth with the auditor.

What records do auditors want to see?

They’ll want to see your sales records, your sales tax returns, customer resale certificates, and your income tax return.

They’ll also ask for a breakdown of sales by state and confirm it ties out to your annual net income.

How far back can a sales tax audit go?

For physical nexus, there is no limit to how far back a state can go. They can go as far back as you’ve been in business.

For economic nexus, they can go back to when their economic nexus laws went into effect. In some states, that’s all the way back to 2018.

How long can a sales tax audit take?

That depends on a lot of factors, including how organized your company’s records are, how complex the data is, and how transparent you are. The best-case scenario is that an audit will take one to six months to complete.

What Happens After a Sales Tax Audit?

A payment plan is made available after the audit has been completed, but it varies by state.

These payment plans are commonly called Installment Payment Agreements (IPAs).

The state may require a significant number of financial disclosures prior to agreeing to an installment payment agreement.

You can apply for a sales and use tax penalty abatement, but to qualify, you have to prove that reasonable cause for non-compliance exists.

If you do a VDA, the state will waive penalties, but they do not waive interest. In either circumstance, they do NOT reduce the total liability owed.

You would have to hire an attorney and prove financial insolvency for them to consider reducing the liability. Most ecommerce businesses don’t have the time or means to do this.

States become inflexible once they find non-compliance, making it crucial to address any issues proactively rather than reactively.

You’re better off owing the federal government money than the state governments. The states do not waive penalties when assessing amounts owed during an audit.

How Do I Avoid an Audit?

Unfortunately, you can’t avoid an audit.

But you CAN reduce the risk.

Like we said before, the first step to becoming compliant and reducing the risk of an audit is understanding where you have nexus.

Once you’ve identified the states where you have nexus, in most cases it’s wise to register and start filing returns.

Best Approach for Low Exposure

If you are a newer seller, registering quickly after crossing the nexus threshold can help reduce future sales tax obligations.

There are rare instances where immediate registration might not make sense, such as:

  • Sales are primarily made through a Marketplace Facilitator
  • Sales are primarily non-taxable products

If the above does apply, you should consider registering even if your exposure is low or it hasn’t been that long since you crossed the threshold

It’s better to register, start filing returns, and deal with back filings quickly than to wait for the state to audit you.

For a list of the economic thresholds, look in the appendix of our 10 Steps to Ensure Sales Tax Doesn’t Burn Down Your Ecommerce Business guide.

Ignoring low exposure states may seem like a good idea at the time, but there is no guarantee that they won’t eventually find you.

Delays only increase the burden as penalties and interest continue to grow.

For a list of areas you need to focus on to ensure that you’re fully compliant, read the 9 Sales Tax Compliance Challenges Facing Online Sellers.

Best Approach for High Exposure

For businesses that have high exposure, regardless of how long you have been selling into a state, the best option is a Voluntary Disclosure Agreement (VDA), especially when the cost for a VDA is the same or less than the penalties owed.

VDAs can be a lifesaver.

Want to find out more? Get in touch to see how we can help.

Benefits of a VDA

  • Reduces the lookback period on economic or physical nexus to three to four years, significantly reducing your liability.
  • Waives the penalty amounts you owe to the state.
  • Registration is included in the VDA process.
  • Wipes the slate clean. At the end of the VDA process, you are settled with the state and ready to move forward.

Don’t forget to turn on your sales tax collection settings AFTER you’ve registered to avoid paying sales tax out of pocket.

When you’re looking at $5-6K in penalties, a VDA pays for itself. We highly encourage you to take the opportunity to use those dollars to your advantage to become compliant (especially in aggressive states).

VDAs can be expensive, but they have the potential to be far less expensive than an audit, depending on your circumstances.

But remember that once the state starts an audit, it’s too late to apply for a VDA and potentially reduce your penalties.

How to Protect Your eCommerce Business in Sales Tax Audits

Staying compliant with sales tax is essential.

States are ramping up enforcement, and audits are becoming more common.

Waiting to see if the state finds you is not a sound strategy—the costs of non-compliance are too high.

Don’t wait until it’s too late.

If you’re ready to get compliant and protect your business, we’re here to help.

Schedule a call with us today and let our team of sales tax experts guide you.

We’ll work with you to figure out the best steps to take, so your business stays on compliant and audit ready.

contact us to get help with your sales tax

Kelley Birrell

Kelley is the Content Manager for LedgerGurus. She oversees all the content creation, capitalizing on the expertise of so many talented people inside LedgerGurus. She lives in Kansas. Fall is her favorite season, and seeing the maple trees glowing in the sun fills her heart with joy!